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Gupta V., Parisi M., Sturgill D., Nuttall R., Doctolero M., Dudko O.K., Malley J.D., Eastman P.S., and Oliver B. "Global analysis of X-chromosome dosage compensation", Journal of Biology 5:3

O'Hanlon TP, Koneru B, Bayat E, Love L, Targoff IN, Malley JD, Malley KG, Miller FW "Immunogenetic Differences between Women who Develop Myositis with and without Silicone Implants." Arthritis Rheum 50(11):3646-50   [PubMed]

Parisi M, Nuttall R, Edwards P, Minor J, Naiman D, Lu J, Doctolero M, Vainer M, Chan C, Malley J, Eastman S, Oliver B "A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults." Genome Biol. 5(6):R40   [PubMed]

Miller M, Jerebko AK, Malley JD, Summers RM "Comparison of stochastic vs. heuristic feature subset selection methods for improving classification algorithms in computer-aided detection." SPIE Medical Imaging 2003: Physiology and Function from Multidimensional Images 5031:102-110

Parisi M, Nuttall R, Naiman D, Bouffard G, Malley J, Andrews J, Eastman S, Oliver B "Paucity of Genes on the Drosophilia X Crhomosome Showing Male-Based Expression." Science 299(5607):697-700   [PubMed]

Miller, M. T., Jerebko, A. K., Malley, J. D., Summers, R. M. "Feature Selection for Computer-Aided Detection using Genetic Algorithms." SPIE 2003, Section on Medical Imaging 2003.

Klein AP, Kovac I, Sorant AJ, Baffoe-Bonnie A, Doan BQ, Ibay G, Lockwood E, Mandal D, Santhosh L, Weissbecker K, Woo J, Zambelli-Weiner A, Zhang J, Naiman DQ, Malley J, Bailey-Wilson JE "Importance Sampling Method of Correction for Multiple Testing in Affectd Sib-pair Linkage Analysis." BMC Genet. 4 Suppl 1:S73

Jerebko AK, Summers RM, Malley JD, Franaszek M, Johnson CD "Computer-assisted detection of colonic polyps with CT colongraphy using neural networks and binary classification trees." Medical Physics 30(1):52-60   [PubMed]

Elvevag B, Kerbs M, Malley JD, Seeley E, Goldberg TE "Autobiographical memory in schizophrenia: an examination of the distribution of memories." Neuropsychology 17(3):402-9   [PubMed]

Earl, P. L., Wyatt, L. S., Montefiori, D. C., Woodward, R., Markham, P. D., Malley, J. D., Vogel, T. U., Allen, T. M., Watkins, D. I., Miller, N., Moss, B. "Prime Versus Prime-Boost Vaccinations with a Recombinant Replication-Defective Vaccinia Virus (MVA) Expressing SHIV-89.6 Env-Gag-Pol followed by Soluble Oligometric Env Protein." Virology

Malley, J. D., A. K. Jerebko, et al. "Variance Reduction for Error Estimation When Classifying Colon Polyps from CT Colongraphy." SPIE 2003 Proceedings

Malley JD, Redner RA, Severini TA, Badner JA, Pajevic S and Bailey-Wilson JE "Estimation of linkage and association from allele transmission data." Biometrical Journal 45(3): 349-366

Malley, J. D., D. Q. Naiman, et al. "A Comprehensive Method for Multiple Testing, with Application to Genome Scans." Presented at Int'l Genetic Epi. Soc meeting, September 2001

Malley JD, Jerebko AK, Summers RM "A committee of support vector machines for detection of colonic polyps." SPIE Medical Imaging 2003: Physiology and Function from Multidimensional Images San Diego, CA, 5031:570-578

Jerebko AK, Malley JD, Franaszek M, Summers RM "Multiple Neural Network Classification Scheme for Detection of Colonic Polyps in CT Colonography Data Sets." Acad Radiol. 10(2):154-160   [PubMed]

Jerebko AK, Malley JD, Franaszek M, Summers RM "Computer aided poly detection in CT colongraphy using an Ensemble of Support Vector Machines." Computer Assisted Radiology and Surgery. Proceedings of the 17th International Congress and Exhibition. 1256:1019-1024

Weickert TN, Terrazas A, Bigelow LB, Malley JD, Egan MF, Weinberger DR, Goldberg TE "Habit and skill learning in schzophrenia: evidence of normal striatal processing with abnormal cortical loading." Learning and Memory 9(6):430-42

Suzuki, T., Shen, H., Akagi, K., Morse, H. C., Malley, J. D., et al "New genes involved in cancer identified by retroviral tagging." Nature Genetics 32: 166-174   [PubMed]

Summers RM, Jerebko AK, Franaszek M, Malley JD, Johnson CD "Colonic polyps: complementary role of computer-aided detection in CT colonog." Radiology 225(2):391-9   [PubMed]

Earl, P. L., Wyatt, L. S., Montefiori, D. C., Bilska, M., Woodward, R., Markham, P. D., Malley, J. D., Vogel, T. U., Allen, T. M., Watkins, D. I., Miller, N., Moss, B. "Comparison of vaccine strategies using recombinant env-gag-pol MVA with or without an oligomeric Env protein boost in the SHIV rhesus macaque model." Virology 294(2): 270-281   [PubMed]

Malley, J. D., A. K. Jerebko, et al. "Significant reductions in sample variance for estimating sensitivity of a CAD algorithm for CTC detection of colon polyps." presented at the Radiological Society of North America Meeting December 1, 2002 in Chicago, IL

Malley JD, Naiman DQ, Bailey-Wilson JE "A comprehensive method for genome scans." Human Heredity 54(4):174-85   [PubMed]

McCray AT, Bodenreider O, Malley JD, Browne AC "Evaluating UMLS strings for natural language processing" Proc AMIA Symp 2001 448-52   [PubMed]

Summers, R. M., Jerebko, A. K., Franaszek, M., Malley, J. D. "An Integrated System for Computer-Aided Diagnosis in CT Colonography: Work-In Progress." Proceedings of the 15th International Congress of Computer Assisted Radiology and Surgery

Summers, R. M., Johnson, C. D., Pusanik, L. M., Malley, J. D., Youssef, A., Reed, J. E. "Automated Polyp Detection at CTColongraphy: Feasibility Assessment in a Human Population." Radiology 219: 51-59   [PubMed]

Jerebko, A. K., Summers, R. M., Malley, J. D., Franaszek, M., Johnson, C. D. "Computer-Assisted Detection of Colonic Polyps in Noisy CT Colonography Data Sets Using Neural Networks and Binary Classification Trees." IEEE Transactrions on Medical Imaging

Blank, P. S., Vogel, S. S., Malley, J. D., Zimmerberg, J. "A Kinetic Analysis of Calcium-Triggered Exocytosis." J. Gen. Phys. 118(2):145-56   [PubMed]

Bailey-Wilson JE, Sorant AJ, Malley JD, Presciuttini S, Redner RA, Severini TA, Badner JA, Pajevic S, et al. "Comparison of novel and existing methods for detection of linkage disequilibrium using parent-child trios in the GAW12 genetic isolate simulated data." Genetic Epidemiology 21 Suppl 1:S378-83   [PubMed]

Summers, R. M., Pusanik, L. M., Malley, J. D., Reed, J. E., Johnson, C. D. "Method of Labeling Colonic Polys at CT Colonography using Computer-assisted Detection." Proceedings of the 14th International Congress of Computer Assisted Radiology and Surgery (CARS)

Summers, R. M., Beaulieu, C. F., Pusanik, L. M., Malley, J. D., Jeffrey, R. B., Jr., Glazer, D. I., Napel, S. "An Automated Polyp Detector for CT Colonography - Feasibility Study." Canadian Mathematical Society Conference Proceedings 216: 284-290   [PubMed]

Smith, T. D., Kuczenski, R., George-Friedman, K., Malley, J. D., Foote, S. L. "In Vivo Microdialysis Assessment of Extracellular Serotonin and Dopamine Levels in Awake Monekys During Sustained Fluoxetine Administration." Synapse 38: 460-470

Peng, A., Koffman, B. M., Malley, J. D., Dalakas, M. D. "Disease progression and functional muscle decline in sporadic inclusion body myositis (s-IBM): observations in 78 patients." Neurology 55: 296-298   [PubMed]

Kim HJ, Tisdale JF, Wu T, Takatoku M, Sellers SE, Zickler P, Metzger ME, Agricola BA, Malley JD, Kato I, Donahue RE, Brown KE, Dunbar CE "Many multi-potential gene-marked progenitor or stem cell clones contribute to hematopoiesis in non-human primates." Blood 96(1):1-8   [PubMed]

Smith RD, Malley JD, Schechter AN "Quantitative analysis of globin gene expression in single human erythroleukemic cells." Nucleic Acids Research 28(24): 4998-5004   [PubMed]

Selbie, W. S., J. D. Malley, et al. "Method for segmenting medical images and detecting surface anomalies in anatomical structures" U.S. Patent Application No. 09/136,136 filed August 18, 1998. Accepted: 2000

Summers, R. M., Pusanik, L. M., Malley, J. D., Hoeg, J. M. "Fractal analysis of virtual endoscopy reconstructions." Proceedings of SPIE 1999 3660: 258-269.

Blank, P. S., Coorssen, J. R., Vogel, S. S., Malley, J. D., Zimmerberg, J. "Calcium-triggered exocytosis: Unifying biophysical, biochemical, and physiological studies." J. Gen. Physiol.

Summers, R. M., Selbie, W. S., Malley, J. D., et al "Polypoid lesions of airways: early experience with computer-assisted detection by using virtual bronchoscopy and surface curvature." Radiology 208: 331-337   [PubMed]

Summers, R. M., Brune, A. M., Choyke, P. L., Chow, C. K., Patronas, N. J., Miller, F. W., White, P. H., Malley, J. D., Rider, L. G. "Juvenile Idiopathic inflammatory mypoathy: exercise-induced changes in muscle at short inversion time inversion-recovery MR imaging." Radiology 191-196   [PubMed]

Summers, R. M., Pusanik, L. M., Malley, J. D. "Automatic detection of endobronchial lesions with virtual bronchoscopy: comparison of two methods." Medical Imaging, Proceedings of SPIE 1998 3338: 327-335

Blank, P. S., Cho, M. S., Vogel, S. S., Kaplan, D., Kang, A., Malley, J. D., Zimmerberg, J. "Submaximal responses in calcium-triggered exocytosis are explained by differences in the calcium sensitivity of individual secretory vesicles." J. Gen. Physiol. 112: 559-567   [PubMed]

Blank, P. S., Vogel, S. S., Cho, M. S., Kaplan, D., Bhuva, D., Malley, J. D., Zimmerberg, J. "The calcium sensitivity of individual secretory vesicles is invariant with the rate of calcium delivery." J. Gen. Physiol. 112: 569-576   [PubMed]

Summers, R. M., Selbie, W. S., Malley, J. D., et al "Computer-Assisted Detection of Endobronchial Lesions Using Virtual Bronchoscopy: Application of Concepts from Different Geometry." International Conference on Mathematical Models in Medical and Health Sciences Nashville, TN May 28-31

Blank, P. S., Vogel, S. S., Malley, J. D., Zimmerberg, J. "Kinetic models for calcium-triggered exocytosis." J. Gen. Phys. 110(1)

Blank, P. S., Vogel, S. S., Malley, J. D., Zimmerberg, J. "Heterogeneity in calcium-triggered exocytosis." Mol. Biol. Cell 297a

Rosenstein, D. L., Kalogeras, K. T., Kalafut, M., Malley, J. D., Rubinow, D. R. "Peripheral measures of arginine vasopressin, artial natriuretic peptide, and adrenocorticotropic hormone in premenstrual syndrome." Psychoneuroendocrinology 21: 347-359

Nunez, S. B., Blye, R. P., Thomas, P. M., Reel, J. R., Barnes, K. M., Malley, J. D., Cutler, G. B. "Recovery of reproductive function in rats treated with the aromatase inhibitor fadrozole." Reproductive Toxicology 10(5): 373-377   [PubMed]